Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52671.1Hypothetical protein. (220 aa)    
Predicted Functional Partners:
AMY53510.1
Hypothetical protein.
 
     0.800
AMY53509.1
Ureidoglycolate lyase.
 
     0.755
mhpA
3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase.
 
   
 0.735
AMY52670.1
Cytochrome p450 CYP199A2.
 
   
 0.696
AMY52682.1
Ureidoglycolate lyase.
 
     0.694
AMY52669.1
Ferredoxin.
 
     0.692
AMY52666.1
Hypothetical protein.
 
     0.600
bphC2
Biphenyl-2,3-diol 1,2-dioxygenase 2.
  
     0.573
bedA
Benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit.
       0.558
AMY52667.1
Hypothetical protein.
       0.549
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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