Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52673.1Hypothetical protein. (282 aa)    
Predicted Functional Partners:
AMY52646.1
Hypothetical protein.
 
     0.771
AMY52672.1
Hypothetical protein.
       0.542
AMY52674.1
Hypothetical protein.
       0.499
AMY52675.1
Hypothetical protein.
       0.499
AMY53103.1
Hypothetical protein.
  
     0.445
clsB
Cardiolipin synthase B.
 
     0.440
AMY53439.1
Hypothetical protein.
  
     0.439
AMY55367.1
Hypothetical protein.
  
     0.423
AMY51706.1
Hypothetical protein.
  
     0.409
rpsA_1
30S ribosomal protein S1.
  
    0.403
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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