Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
proP_1Proline/betaine transporter. (465 aa)    
Predicted Functional Partners:
gutB_2
Sorbitol dehydrogenase.
  
    0.488
por_1
Polyol:NADP oxidoreductase; Belongs to the mannitol dehydrogenase family.
     
 0.486
kdgK_2
2-dehydro-3-deoxygluconokinase.
     
 0.482
eda
KHG/KDPG aldolase.
       0.481
AMY52692.1
D-mannonate dehydratase.
       0.478
AMY52687.1
18 kDa heat shock protein; Belongs to the small heat shock protein (HSP20) family.
       0.459
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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