Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
gutB_2Sorbitol dehydrogenase. (348 aa)    
Predicted Functional Partners:
gutB_4
Sorbitol dehydrogenase.
  
  
 
0.928
gutB_3
Sorbitol dehydrogenase.
  
  
 
0.913
fruA
PTS system fructose-specific EIIABC component.
  
 
 0.913
kdgK_1
2-dehydro-3-deoxygluconokinase.
  
 
 0.907
mtlK_1
Mannitol 2-dehydrogenase.
    
 0.905
mtlK_2
Mannitol 2-dehydrogenase.
    
 0.905
kdgK_2
2-dehydro-3-deoxygluconokinase.
  
  
 0.789
eda
KHG/KDPG aldolase.
     
 0.785
por_1
Polyol:NADP oxidoreductase; Belongs to the mannitol dehydrogenase family.
     
 0.784
AMY52692.1
D-mannonate dehydratase.
  
  
 0.781
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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