Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY52709.1Putative GMC-type oxidoreductase. (528 aa)    
Predicted Functional Partners:
AMY52708.1
Putative aldehyde dehydrogenase.
 
  
 0.734
AMY54034.1
Hypothetical protein.
    
 0.561
AMY54543.1
Hypothetical protein.
    
 0.529
AMY54691.1
Hypothetical protein.
    
 0.529
AMY55397.1
Hypothetical protein.
    
 0.529
AMY51830.1
Hypothetical protein.
    
 0.475
AMY52648.1
Hypothetical protein.
    
 0.475
AMY53347.1
Hypothetical protein.
    
 0.475
AMY54257.1
Hypothetical protein.
    
 0.475
AMY54258.1
Hypothetical protein.
    
 0.475
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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