Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AMY52717.1Hypothetical protein. (218 aa)    
Predicted Functional Partners:
AMY52716.1
Undecaprenyl-phosphate mannosyltransferase.
   
 0.986
wbiB_2
dTDP-L-rhamnose 4-epimerase.
 
   
 0.975
AMY52713.1
Hypothetical protein.
 
   
 0.942
mtnP
S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
 
   
 0.926
AMY52712.1
Hypothetical protein.
     0.879
yedY_2
Sulfoxide reductase catalytic subunit YedY.
 
     0.818
AMY52711.1
Hypothetical protein.
 
     0.615
AMY52718.1
Hypothetical protein.
       0.529
AMY52458.1
Undecaprenyl-phosphate mannosyltransferase.
     
 0.408
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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