Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52720.1Hypothetical protein. (361 aa)    
Predicted Functional Partners:
tehB
Tellurite methyltransferase.
  
  
 0.846
AMY52722.1
Acyl-CoA dehydrogenase, short-chain specific.
       0.746
AMY54034.1
Hypothetical protein.
 
   0.522
ppe2
Putative PPE family protein PPE2.
  
   
 0.477
tolB
Protein TolB.
  
 
 0.474
AMY55841.1
Hypothetical protein.
  
     0.461
AMY55523.1
Hypothetical protein.
   
 
 0.439
AMY54310.1
Hypothetical protein.
   
  
 0.433
alpha-LP
Alpha-lytic protease.
 
 
 0.429
AMY55465.1
Hypothetical protein.
  
 
 0.416
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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