Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52727.1Hypothetical protein. (741 aa)    
Predicted Functional Partners:
AMY55708.1
Hypothetical protein.
  
     0.588
AMY53316.1
Hypothetical protein.
  
     0.582
AMY54467.1
Hypothetical protein.
  
     0.574
AMY55699.1
Hypothetical protein.
  
     0.574
AMY53141.1
Hypothetical protein.
 
     0.571
AMY54178.1
Hypothetical protein.
  
     0.561
AMY52782.1
Hypothetical protein.
  
     0.549
AMY51542.1
Hypothetical protein.
  
     0.545
hsaB
Flavin-dependent monooxygenase, reductase subunit HsaB.
  
    0.539
cdaR_2
Carbohydrate diacid regulator.
 
     0.518
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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