Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amiC_1Aliphatic amidase expression-regulating protein. (358 aa)    
Predicted Functional Partners:
AMY54069.1
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.988
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.986
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
 0.970
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
 
 
 0.969
amiC_2
Aliphatic amidase expression-regulating protein.
  
  
 
0.923
livH_2
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.815
AMY52746.1
Hypothetical protein.
 
     0.795
livH_1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.767
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
  
 0.739
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
  
 0.723
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.