Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52758.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.959
mmpL3_2
Putative membrane protein mmpL3.
  
  
 0.887
AMY53374.1
Hypothetical protein.
 
   
 0.760
AMY55741.1
Alpha-(1->3)-arabinofuranosyltransferase.
  
     0.737
aftB
Terminal beta-(1->2)-arabinofuranosyltransferase.
  
   
 0.733
AMY52755.1
Hypothetical protein.
       0.723
AMY52769.1
Hypothetical protein.
 
   
 0.719
embC_2
Putative arabinosyltransferase C.
  
   
 0.704
embC_1
Putative arabinosyltransferase C.
  
   
 0.701
embB
Putative arabinosyltransferase B.
  
   
 0.689
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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