Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mmpL3_2Putative membrane protein mmpL3. (1118 aa)    
Predicted Functional Partners:
AMY52758.1
Hypothetical protein.
  
  
 0.887
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.886
AMY52755.1
Hypothetical protein.
       0.722
AMY52577.1
Hypothetical protein.
  
     0.579
AMY52756.1
Hypothetical protein.
       0.456
AMY52885.1
Hypothetical protein.
  
     0.447
eccB3
ESX-3 secretion system protein eccB3.
  
 
 
 0.434
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
    
 
 0.426
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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