Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52769.1Hypothetical protein. (377 aa)    
Predicted Functional Partners:
cyaB_1
Adenylate cyclase 2.
 
     0.890
liaS_2
Sensor histidine kinase LiaS.
     
 0.765
degU_1
Transcriptional regulatory protein DegU.
       0.759
yceI_1
Protein YceI; Belongs to the UPF0312 family.
       0.734
AMY52758.1
Hypothetical protein.
 
   
 0.719
tqsA
AI-2 transport protein TqsA.
     
 0.707
AMY55333.1
Hypothetical protein.
  
     0.699
AMY52838.1
Hypothetical protein.
 
   
 0.678
aftB
Terminal beta-(1->2)-arabinofuranosyltransferase.
 
  
 0.647
AMY53374.1
Hypothetical protein.
  
   
 0.637
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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