Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbpA_1Penicillin-binding protein A. (609 aa)    
Predicted Functional Partners:
pbpG
Penicillin-binding protein 2D.
 
 
 
 0.824
ftsW
Putative lipid II flippase FtsW; Belongs to the SEDS family.
 
 
 0.809
AMY52782.1
Hypothetical protein.
 
    
0.803
AMY52784.1
Hypothetical protein.
       0.770
rodA_1
Putative FtsW-like protein; Belongs to the SEDS family.
 
 
 0.763
ftsQ
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.758
AMY52781.1
Hypothetical protein.
  
    0.727
ponA1
Penicillin-binding protein 1A.
 
 
 
 0.706
yheS
Putative ABC transporter ATP-binding protein YheS.
     
 0.660
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
  
 0.611
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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