Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dehH1_2Haloacetate dehalogenase H-1. (270 aa)    
Predicted Functional Partners:
yheS
Putative ABC transporter ATP-binding protein YheS.
   
   0.822
yvaM_1
AB hydrolase superfamily protein YvaM.
  
     0.616
cpo_2
Non-heme chloroperoxidase.
  
     0.538
yvaM_2
AB hydrolase superfamily protein YvaM.
  
     0.516
ybfK
Carboxylesterase YbfK.
  
     0.476
pbpA_1
Penicillin-binding protein A.
       0.457
AMY52784.1
Hypothetical protein.
       0.450
AMY53862.1
2-(acetamidomethylene)succinate hydrolase.
  
     0.449
mmgC_1
Acyl-CoA dehydrogenase.
  
  0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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