Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ugpA_1Sn-glycerol-3-phosphate transport system permease protein UgpA. (316 aa)    
Predicted Functional Partners:
AMY52792.1
Putative ABC transporter-binding protein.
 
 0.998
sugB_1
Trehalose transport system permease protein SugB.
 
 0.997
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.995
sugC_3
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.980
sugC_4
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.980
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
  
  0.944
araQ
L-arabinose transport system permease protein AraQ.
 
 
 0.907
ycjP
Inner membrane ABC transporter permease protein YcjP.
 
 
 0.906
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 
 0.903
sugB_3
Trehalose transport system permease protein SugB.
 
 
 0.902
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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