Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
deoR_1Deoxyribonucleoside regulator. (341 aa)    
Predicted Functional Partners:
AMY52792.1
Putative ABC transporter-binding protein.
 
   
 0.922
sugB_1
Trehalose transport system permease protein SugB.
 
   
 0.893
ugpA_1
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
   
 0.892
mtlK_1
Mannitol 2-dehydrogenase.
 
   
 0.809
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
     
 0.761
gutB_3
Sorbitol dehydrogenase.
 
   
 0.748
dhaK
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK.
     0.443
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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