Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY52800.1Hypothetical protein. (389 aa)    
Predicted Functional Partners:
gudD_2
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.679
udh
Uronate dehydrogenase.
 
    0.645
AMY52801.1
Hypothetical protein.
       0.579
AMY52811.1
Putative 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
    0.557
AMY55299.1
Hypothetical protein.
  
     0.496
ugpB_1
Sn-glycerol-3-phosphate-binding periplasmic protein UgpB.
 
     0.494
AMY52805.1
L-talarate/galactarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.471
AMY53804.1
Hypothetical protein.
  
     0.453
AMY51999.1
Hypothetical protein.
  
     0.449
mhqR
HTH-type transcriptional regulator MhqR.
  
     0.439
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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