Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dauA_2C4-dicarboxylic acid transporter DauA. (502 aa)    
Predicted Functional Partners:
mta_1
HTH-type transcriptional activator mta.
 
     0.758
hcaR_2
Hca operon transcriptional activator HcaR; Belongs to the LysR transcriptional regulatory family.
     
 0.518
qcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 
 0.452
mrpA
Na(+)/H(+) antiporter subunit A.
  
  
 0.451
nuoM
NADH-quinone oxidoreductase subunit M.
  
 
 0.417
AMY52972.1
Hypothetical protein.
  
   0.401
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.401
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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