Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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ddpC_2Putative D,D-dipeptide transport system permease protein DdpC. (328 aa)    
Predicted Functional Partners:
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.991
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 0.989
gsiC_1
Glutathione transport system permease protein GsiC.
 
 
 0.987
dppA_2
Periplasmic dipeptide transport protein.
 
 
 0.980
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD.
 
 0.933
oppF_1
Oligopeptide transport ATP-binding protein OppF.
 
 0.925
oppD_1
Oligopeptide transport ATP-binding protein OppD.
  
 0.916
nikB_1
Nickel transport system permease protein NikB.
 
 
 0.906
dppB_2
Dipeptide transport system permease protein DppB.
 
 
 0.906
gsiC_2
Glutathione transport system permease protein GsiC.
 
 
 0.906
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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