Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
novJShort-chain reductase protein NovJ. (252 aa)    
Predicted Functional Partners:
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.972
fabF_1
3-oxoacyl-[acyl-carrier-protein] synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.945
AMY52249.1
Putative O-methyltransferase.
  
 
 0.874
AMY52838.1
Hypothetical protein.
  
 
 0.631
fabG_13
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
     0.610
drrA_3
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
   0.598
isfD_2
Sulfoacetaldehyde reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.593
ybhR_1
Inner membrane transport permease YbhR.
  
  
 0.558
bdcA
Cyclic-di-GMP-binding biofilm dispersal mediator protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.544
kasA
3-oxoacyl-[acyl-carrier-protein] synthase 1; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.516
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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