Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ybhR_1Inner membrane transport permease YbhR. (251 aa)    
Predicted Functional Partners:
drrA_3
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.979
drrA_11
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.783
drrA_1
Doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.757
AMY52838.1
Hypothetical protein.
       0.741
drrA_7
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.730
drrB_1
Doxorubicin resistance ABC transporter permease protein DrrB.
  
  
  0.687
novJ
Short-chain reductase protein NovJ.
  
  
 0.558
bioM
Biotin transport ATP-binding protein BioM.
  
 
 0.558
AMY52841.1
Hypothetical protein.
       0.532
drrA_2
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.529
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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