Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52841.1Hypothetical protein. (328 aa)    
Predicted Functional Partners:
galE_1
UDP-glucose 4-epimerase.
 
  
 0.585
drrA_3
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
 
  0.583
ygbN
Inner membrane permease YgbN.
     
 0.551
ybhR_1
Inner membrane transport permease YbhR.
       0.532
AMY52838.1
Hypothetical protein.
       0.512
novJ
Short-chain reductase protein NovJ.
  
 
 0.462
tgs3
Putative diacylglycerol O-acyltransferase tgs3; Belongs to the long-chain O-acyltransferase family.
  
   0.422
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
  
 0.418
AMY53765.1
Hypothetical protein.
 
   
 0.412
carA2
Zeta-carotene-forming phytoene desaturase.
 
   
 0.403
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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