Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52865.1Hypothetical protein. (82 aa)    
Predicted Functional Partners:
mshB_1
1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase.
 
    0.953
AMY52866.1
Hypothetical protein.
 
    0.952
AMY52864.1
Hypothetical protein.
 
     0.946
AMY52868.1
Hypothetical protein.
 
  
 0.945
AMY55523.1
Hypothetical protein.
  
 
 0.786
todS
Sensor histidine kinase TodS.
  
 
 0.644
mftE
Putative mycofactocin system creatinine amidohydrolase family protein MftE.
  
  
 0.609
murG_1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
    0.591
AMY51713.1
Hypothetical protein.
 
   
 0.520
AMY54051.1
Hypothetical protein.
  
     0.508
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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