Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mshB_11D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. (249 aa)    
Predicted Functional Partners:
AMY52868.1
Hypothetical protein.
     0.996
AMY52866.1
Hypothetical protein.
    0.991
AMY52864.1
Hypothetical protein.
 
    0.953
AMY52865.1
Hypothetical protein.
 
    0.953
murG_1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
     0.545
AMY51716.1
Hypothetical protein.
 
  
 0.457
ldtB_1
L,D-transpeptidase 2.
       0.435
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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