Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
acgPutative NAD(P)H nitroreductase acg. (333 aa)    
Predicted Functional Partners:
AMY52880.1
Universal stress protein.
 
  
 0.832
AMY52879.1
Hypothetical protein.
  
    0.791
AMY52878.1
Hypothetical protein.
       0.520
AMY53642.1
Hypothetical protein.
  
  
 0.510
ybhR_2
Inner membrane transport permease YbhR.
 
  
 0.510
ilvD_1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
     
 0.493
fosB2
Metallothiol transferase FosB 2.
 
    0.463
AMY55234.1
Hypothetical protein.
  
   
 0.462
AMY53510.1
Hypothetical protein.
 
    0.441
AMY55986.1
Hypothetical protein.
 
  
 0.438
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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