Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52886.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
AMY52885.1
Hypothetical protein.
       0.776
AMY55222.1
Hypothetical protein.
  
     0.751
AMY53339.1
Hypothetical protein.
  
     0.717
AMY54330.1
Hypothetical protein.
  
     0.649
ppe2
Putative PPE family protein PPE2.
  
     0.647
AMY55296.1
Hypothetical protein.
  
     0.635
AMY55534.1
Hypothetical protein.
  
     0.634
AMY54257.1
Hypothetical protein.
  
     0.614
AMY55708.1
Hypothetical protein.
  
     0.577
AMY55841.1
Hypothetical protein.
  
     0.577
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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