Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ramA_2(R)-stereoselective amidase. (283 aa)    
Predicted Functional Partners:
thiL_1
Thiamine-monophosphate kinase.
 
   
 0.971
pimA_2
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase.
 
    0.969
lipA_1
Lipoyl synthase.
 
     0.968
czcO_3
Putative oxidoreductase CzcO.
 
  
 0.949
AMY52893.1
Hypothetical protein.
 
  
 0.948
AMY52897.1
Hypothetical protein.
 
   
 0.948
aguA
Putative agmatine deiminase; Belongs to the agmatine deiminase family.
 
 0.942
puo_1
Putrescine oxidase.
    
 0.905
bauA
Beta-alanine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.904
AMY52894.1
N-carbamoyl-D-amino acid hydrolase.
 
    
0.885
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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