Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
baeB_1Putative polyketide biosynthesis zinc-dependent hydrolase BaeB. (210 aa)    
Predicted Functional Partners:
AMY52921.1
S-(hydroxymethyl)mycothiol dehydrogenase.
 
  
 0.911
AMY52922.1
Hypothetical protein.
       0.655
AMY53475.1
S-(hydroxymethyl)mycothiol dehydrogenase.
 
  
 0.627
AMY55799.1
S-(hydroxymethyl)mycothiol dehydrogenase.
 
  
 0.624
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.516
degU_2
Transcriptional regulatory protein DegU.
     
 0.491
AMY53918.1
Hypothetical protein.
  
     0.479
cdhR_2
HTH-type transcriptional regulator CdhR.
       0.457
soxA
Sarcosine oxidase subunit alpha.
  
 0.457
fadH
2,4-dienoyl-CoA reductase [NADPH].
   
 0.428
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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