Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alkA_1DNA-3-methyladenine glycosylase. (314 aa)    
Predicted Functional Partners:
yhdN_2
General stress protein 69.
       0.627
exoA
Exodeoxyribonuclease.
   
 0.625
xthA
Exodeoxyribonuclease III.
   
 0.625
AMY52928.1
Hypothetical protein.
 
     0.604
uvrD2
ATP-dependent DNA helicase UvrD2.
   
 
 0.581
AMY54591.1
Hypothetical protein.
  
   
 0.579
end
Putative endonuclease 4.
 
 
 
 0.542
ligC
DNA ligase C1.
 
  
 0.536
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.515
AMY53669.1
Hypothetical protein.
 
 
 
 0.501
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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