Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiB_1Putative protein kinase UbiB. (451 aa)    
Predicted Functional Partners:
yxaF
Putative HTH-type transcriptional regulator YxaF.
       0.773
rdmC
Aclacinomycin methylesterase RdmC.
  
  
 0.584
AMY52941.1
Hypothetical protein.
       0.579
AMY51806.1
Hypothetical protein.
   
 0.511
nicC
6-hydroxynicotinate 3-monooxygenase.
   
 0.511
hpxO
FAD-dependent urate hydroxylase.
   
 0.511
tfdB
2,4-dichlorophenol 6-monooxygenase.
   
 0.511
AMY53221.1
Hypothetical protein; Belongs to the UPF0311 family.
   
 0.511
mhpA
3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase.
   
 0.511
pobA
P-hydroxybenzoate hydroxylase.
   
 0.511
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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