Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
qorA_1Quinone oxidoreductase 1. (325 aa)    
Predicted Functional Partners:
AMY55744.1
Putative enoyl-CoA hydratase 1.
 
 0.835
AMY52290.1
Putative enoyl-CoA hydratase 1.
 
 0.734
dnaK_1
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.660
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
 
 
 0.659
yfmJ_3
Putative NADP-dependent oxidoreductase YfmJ.
 
 
 0.620
AMY52946.1
Hypothetical protein.
  
    0.573
clcD
Carboxymethylenebutenolidase.
  
    0.563
yfmJ_2
Putative NADP-dependent oxidoreductase YfmJ.
 
 
 0.527
AMY54569.1
Hypothetical protein.
 
   0.447
AMY51774.1
Hypothetical protein.
 
   0.427
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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