Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52953.1Hypothetical protein. (299 aa)    
Predicted Functional Partners:
ephD_3
Putative oxidoreductase EphD.
 
     0.900
ophA1_1
Phthalate dioxygenase reductase.
 
     0.832
AMY52473.1
Hypothetical protein.
 
     0.686
ephD_4
Putative oxidoreductase EphD.
 
     0.679
AMY52952.1
Hypothetical protein.
       0.539
fadR_2
Fatty acid metabolism regulator protein.
  
     0.479
AMY55925.1
Acyl-CoA dehydrogenase, short-chain specific.
  
     0.470
fadR_3
Fatty acid metabolism regulator protein.
  
     0.444
desA3_4
Stearoyl-CoA 9-desaturase.
 
     0.441
AMY54994.1
Stearoyl-CoA 9-desaturase electron transfer partner.
 
     0.435
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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