Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ntaA_1Nitrilotriacetate monooxygenase component A. (422 aa)    
Predicted Functional Partners:
ped
(S)-1-Phenylethanol dehydrogenase.
 
     0.879
soxC
Dibenzothiophene desulfurization enzyme C.
  
  
 0.714
ssuA
Putative aliphatic sulfonates-binding protein.
 
  
 0.622
ssuC_4
Putative aliphatic sulfonates transport permease protein SsuC.
 
  
 0.525
ssuD_2
Alkanesulfonate monooxygenase.
 
  
0.460
ssuB_1
Aliphatic sulfonates import ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
  
 0.456
nplT
Neopullulanase.
       0.440
AMY52959.1
Lactate 2-monooxygenase.
       0.440
guaA_2
GMP synthase.
       0.440
hsaB
Flavin-dependent monooxygenase, reductase subunit HsaB.
 
  
 0.403
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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