Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dml2,3-dimethylmalate lyase. (288 aa)    
Predicted Functional Partners:
AMY54781.1
Hypothetical protein.
 
  
 0.916
gltA2
Citrate synthase 1; Belongs to the citrate synthase family.
 
 
 0.839
hacA
Homoaconitase large subunit.
 
  
 0.836
dmdB
2,3-dimethylmalate dehydratase small subunit.
 
     0.822
proP_2
Proline/betaine transporter.
       0.773
glcB_2
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.728
citA
Putative citrate synthase 2; Belongs to the citrate synthase family.
  
 
 0.706
mii
3-methylitaconate isomerase.
 
  
 0.643
kipR_2
HTH-type transcriptional regulator KipR.
 
     0.602
acsA_2
Acetyl-coenzyme A synthetase.
 
  
 0.500
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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