Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rutA_2Pyrimidine monooxygenase RutA. (325 aa)    
Predicted Functional Partners:
fgd1_4
F420-dependent glucose-6-phosphate dehydrogenase.
  
     0.649
cofD
2-phospho-L-lactate transferase.
 
   
 0.643
ddn
Deazaflavin-dependent nitroreductase.
  
   
 0.642
AMY55285.1
Putative nitroreductase.
  
   
 0.638
AMY52976.1
Hypothetical protein.
       0.583
AMY52977.1
Hypothetical protein.
       0.583
AMY52978.1
Hypothetical protein.
       0.574
AMY52974.1
Hypothetical protein.
       0.560
fbiB_1
Coenzyme F420:L-glutamate ligase.
 
  
 0.552
AMY52320.1
Putative nitroreductase.
  
   
 0.529
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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