Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52978.1Hypothetical protein. (247 aa)    
Predicted Functional Partners:
AMY52976.1
Hypothetical protein.
 
     0.970
AMY52977.1
Hypothetical protein.
 
    
0.910
AMY53092.1
Hypothetical protein.
 
     0.742
AMY53090.1
Hypothetical protein.
 
     0.732
stiP
Cysteine protease StiP.
 
     0.686
yceC
Stress response protein SCP2.
 
     0.629
AMY52979.1
Hypothetical protein.
       0.610
AMY53087.1
Hypothetical protein.
 
     0.592
yceD_4
General stress protein 16U.
 
     0.591
AMY54626.1
Hypothetical protein.
 
     0.584
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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