Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52980.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
AMY52979.1
Hypothetical protein.
       0.714
AMY52978.1
Hypothetical protein.
       0.553
AMY52976.1
Hypothetical protein.
       0.546
AMY52977.1
Hypothetical protein.
       0.546
rutA_2
Pyrimidine monooxygenase RutA.
       0.421
dasR
HTH-type transcriptional repressor DasR.
  
  
 0.414
mngR
Mannosyl-D-glycerate transport/metabolism system repressor MngR.
  
  
 0.414
yvoA
HTH-type transcriptional repressor YvoA.
  
  
 0.414
phnF
HTH-type transcriptional repressor PhnF.
  
  
 0.414
cobB_1
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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