Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52985.1Hypothetical protein. (789 aa)    
Predicted Functional Partners:
ydaF_2
Putative ribosomal N-acetyltransferase YdaF.
  
    0.774
qacA_2
Antiseptic resistance protein.
     
 0.766
AMY55585.1
Hypothetical protein.
  
     0.655
AMY53979.1
Hypothetical protein.
  
     0.651
AMY55584.1
Hypothetical protein.
  
     0.629
AMY55586.1
Hypothetical protein.
 
    0.623
AMY53357.1
Hypothetical protein.
 
     0.598
AMY54101.1
Hypothetical protein.
  
     0.594
AMY54092.1
Putative HTH-type transcriptional regulator.
  
     0.586
pspB_1
Putative phosphoserine phosphatase 2.
  
    0.575
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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