Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
speEPolyamine aminopropyltransferase. (272 aa)    
Predicted Functional Partners:
AMY52990.1
Hypothetical protein.
       0.779
kstR2_3
HTH-type transcriptional repressor KstR2.
       0.775
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
       0.768
AMY52540.1
Hypothetical protein.
  
    0.638
gbh
Guanidinobutyrase; Belongs to the arginase family.
  
  
 0.613
AMY55615.1
Hypothetical protein.
  
     0.606
yhdG_6
Putative amino acid permease YhdG.
  
  
 0.528
kipA_1
KipI antagonist.
     
 0.520
atzF
Allophanate hydrolase.
       0.509
rimM
Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
   
    0.503
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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