Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dhbA2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase. (221 aa)    
Predicted Functional Partners:
kstR2_3
HTH-type transcriptional repressor KstR2.
       0.773
speE
Polyamine aminopropyltransferase.
       0.768
AMY52990.1
Hypothetical protein.
       0.768
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
  
 0.630
prrB
Sensor-type histidine kinase PrrB.
      
 0.618
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
      
 0.618
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
      
 0.618
mbtI
Salicylate synthase.
      
 0.618
pknG
Serine/threonine-protein kinase PknG.
      
 0.618
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
      
 0.618
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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