Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY52998.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
AMY52999.1
Putative HTH-type transcriptional regulator.
       0.788
yhdG_6
Putative amino acid permease YhdG.
       0.628
AMY52994.1
Hypothetical protein.
       0.628
AMY52995.1
Hypothetical protein.
       0.628
kipA_1
KipI antagonist.
       0.628
atzF
Allophanate hydrolase.
       0.628
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
  
 0.596
mbtB
Phenyloxazoline synthase MbtB.
  
 
 0.566
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
  
 0.425
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
       0.423
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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