Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
ahpFAlkyl hydroperoxide reductase subunit F. (328 aa)    
Predicted Functional Partners:
ubiG_3
Ubiquinone biosynthesis O-methyltransferase.
 
    0.905
AMY55804.1
Alkyl hydroperoxide reductase subunit C.
  
 
 0.725
resA_1
Thiol-disulfide oxidoreductase ResA.
 
 
 0.526
trxA_2
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.502
AMY54892.1
Thioredoxin C-1.
  
 
 0.501
trxC
Putative thioredoxin-2; Belongs to the thioredoxin family.
  
 
 0.501
AMY52845.1
Hypothetical protein.
  
     0.496
AMY54875.1
Hypothetical protein.
  
     0.474
AMY53004.1
Hypothetical protein.
       0.465
AMY52105.1
Hypothetical protein.
 
    0.450
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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