Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53021.1Hypothetical protein. (180 aa)    
Predicted Functional Partners:
AMY53020.1
Hypothetical protein.
 
     0.948
AMY53019.1
Hypothetical protein.
 
     0.931
AMY53017.1
Hypothetical protein.
 
     0.914
AMY53016.1
Alkaline shock protein 23.
 
     0.828
AMY53022.1
Hypothetical protein.
       0.750
AMY53018.1
Hypothetical protein.
       0.649
cnrH
RNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily.
       0.491
AMY55296.1
Hypothetical protein.
  
     0.443
AMY56008.1
Hypothetical protein.
  
  
 0.432
AMY53014.1
Hypothetical protein.
       0.424
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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