Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53034.1Hypothetical protein. (527 aa)    
Predicted Functional Partners:
drrA_5
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
     0.936
AMY55414.1
Hypothetical protein.
  
    0.600
fabG_9
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.564
AMY55415.1
Hypothetical protein.
  
     0.505
nhaK_2
Sodium, potassium, lithium and rubidium/H(+) antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
     
 0.495
araA_2
L-arabinose 1-dehydrogenase.
  
     0.450
AMY55314.1
Hypothetical protein.
  
     0.447
todS
Sensor histidine kinase TodS.
  
 
 0.418
AMY54461.1
Hypothetical protein.
  
    0.406
AMY55523.1
Hypothetical protein.
  
 
 0.404
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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