Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
drrA_5Daunorubicin/doxorubicin resistance ATP-binding protein DrrA. (266 aa)    
Predicted Functional Partners:
AMY53034.1
Hypothetical protein.
 
     0.936
sugC_3
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
    
0.641
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
    
0.634
AMY52854.1
Hypothetical protein.
  
 
 0.611
AMY53611.1
Putative ABC transporter ATP-binding protein.
  
 0.578
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
    
0.576
fabG_9
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.564
AMY53610.1
Putative multidrug export ATP-binding/permease protein.
  
 0.561
nhaK_2
Sodium, potassium, lithium and rubidium/H(+) antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
  
 
 0.533
AMY53761.1
Hypothetical protein.
 
 
 0.533
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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