Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53055.1Hypothetical protein. (207 aa)    
Predicted Functional Partners:
AMY53492.1
Hypothetical protein.
  
     0.671
bphC2
Biphenyl-2,3-diol 1,2-dioxygenase 2.
 
   
 0.653
dapA_1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.649
AMY53228.1
Hypothetical protein.
 
     0.613
dmg_1
Dimethylglycine oxidase; Belongs to the GcvT family.
  
     0.612
nicC
6-hydroxynicotinate 3-monooxygenase.
  
     0.609
aroB_1
3-dehydroquinate synthase.
  
     0.561
cut3_1
Putative cutinase cut3.
  
     0.559
AMY53599.1
Putative inactive lipase.
  
  
 0.530
AMY53024.1
Putative inactive lipase.
  
  
 0.521
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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