Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY53056.1Hypothetical protein. (241 aa)    
Predicted Functional Partners:
AMY53057.1
Hypothetical protein.
  
    0.773
pheT
Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.634
AMY53058.1
Hypothetical protein.
       0.565
gltB_1
Glutamate synthase [NADPH] large chain.
       0.528
gltB_2
Glutamate synthase [NADPH] large chain.
       0.528
AMY53059.1
Hypothetical protein.
   
   0.519
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.512
cinA_1
CinA-like protein; Belongs to the CinA family.
  
    0.455
cdhR_2
HTH-type transcriptional regulator CdhR.
 
     0.454
bcp_1
Putative peroxiredoxin bcp.
 
   0.452
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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