Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53059.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
ftsH_2
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
  
 0.803
AMY55523.1
Hypothetical protein.
   
 
 0.694
AMY53058.1
Hypothetical protein.
     
 0.654
AMY53593.1
Hypothetical protein.
  
 
  0.604
acuC
Acetoin utilization protein AcuC.
  
   0.560
hisS
Histidine--tRNA ligase.
    
  0.552
AMY53056.1
Hypothetical protein.
   
   0.519
todS
Sensor histidine kinase TodS.
   
 
 0.502
AMY54034.1
Hypothetical protein.
  
 
 0.500
hflK
Modulator of FtsH protease HflK.
    
 0.500
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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