Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yceD_2General stress protein 16U. (191 aa)    
Predicted Functional Partners:
AMY54626.1
Hypothetical protein.
  
 0.953
AMY53090.1
Hypothetical protein.
 
     0.939
stiP
Cysteine protease StiP.
 
     0.939
AMY53092.1
Hypothetical protein.
 
     0.939
AMY53087.1
Hypothetical protein.
 
   
 0.912
AMY55531.1
Hypothetical protein.
   
 0.800
AMY53089.1
Hypothetical protein.
       0.563
yceC
Stress response protein SCP2.
 
    
0.465
AMY52978.1
Hypothetical protein.
 
     0.444
AMY52977.1
Hypothetical protein.
 
     0.423
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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