Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53098.1Hypothetical protein. (516 aa)    
Predicted Functional Partners:
ponA1
Penicillin-binding protein 1A.
  
    0.891
AMY55642.1
Alpha-(1->6)-mannopyranosyltransferase.
 
     0.643
AMY55917.1
Hypothetical protein.
  
     0.637
AMY53749.1
Hypothetical protein.
  
     0.582
mptA
Alpha-(1->6)-mannopyranosyltransferase A.
  
     0.576
AMY55365.1
Hypothetical protein.
  
     0.572
AMY54900.1
Hypothetical protein.
  
     0.554
AMY56054.1
Hypothetical protein.
  
     0.553
AMY56050.1
Hypothetical protein.
  
     0.549
AMY55016.1
Hypothetical protein.
  
     0.548
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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